Index

B

box_lengths (pbcluster.cluster.Cluster attribute) (pbcluster.trajectory.Trajectory attribute)

C

Cluster (class in pbcluster.cluster) cluster_dict (pbcluster.trajectory.Trajectory attribute) compute_asphericity() (pbcluster.cluster.Cluster method) compute_bond_durations() (pbcluster.trajectory.Trajectory method) compute_bonds() (pbcluster.cluster.Cluster method) (pbcluster.trajectory.Trajectory method) compute_center_of_mass() (pbcluster.cluster.Cluster method) compute_cluster_properties() (pbcluster.cluster.Cluster method) (pbcluster.trajectory.Trajectory method)

compute_coordination_number() (pbcluster.cluster.Cluster method) compute_distance_from_com() (pbcluster.cluster.Cluster method) compute_minimum_node_cuts() (pbcluster.cluster.Cluster method) compute_n_particles() (pbcluster.cluster.Cluster method) compute_particle_properties() (pbcluster.cluster.Cluster method) (pbcluster.trajectory.Trajectory method) compute_rg() (pbcluster.cluster.Cluster method) compute_unwrapped_center_of_mass() (pbcluster.cluster.Cluster method) cutoff_distance (pbcluster.cluster.Cluster attribute) (pbcluster.trajectory.Trajectory attribute)

F

flatten_dict() (in module pbcluster.utils)

G

get_graph_from_particle_positions() (in module pbcluster.utils) get_within_cutoff_graph() (in module pbcluster.utils)

get_within_cutoff_matrix() (in module pbcluster.utils) graph (pbcluster.cluster.Cluster attribute)

N

n_dimensions (pbcluster.cluster.Cluster attribute) (pbcluster.trajectory.Trajectory attribute)

n_particles (pbcluster.cluster.Cluster attribute)

P

pairwise_distances() (in module pbcluster.utils) pairwise_distances_distinct() (in module pbcluster.utils) particle_df (pbcluster.cluster.Cluster attribute)

pbcluster (module) pbcluster.cluster (module) pbcluster.trajectory (module) pbcluster.utils (module)

T

Trajectory (class in pbcluster.trajectory)

trajectory_df (pbcluster.trajectory.Trajectory attribute)